Descrição
Seawater was collected on board the NOAA ship Ronald H. Brown as part of the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise from September 13 to October 21, 2021. Sampling for GOMECC-4 occurred along 16 coastal-offshore transects across the entire Gulf of Mexico and an additional line at 27N latitude in the Atlantic Ocean. We also collected eDNA samples near Padre Island National Seashore (U.S. National Parks Service), a barrier island located off the coast of south Texas. Vertical CTD sampling was employed at each site to measure discrete chemical, physical, and biological properties. Water sampling for DNA filtration was conducted at 54 out of 141 total sites and three depths per site (surface, deep chlorophyll maximum, and near bottom) to capture horizontal and vertical gradients of bacterial, protistan, and metazoan diversity across the Gulf.
Registros de Dados
Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 311.390 registros.
Também existem 1 tabelas de dados de extensão. Um registro de extensão fornece informações adicionais sobre um registro do núcleo. O número de registros em cada tabela de dados de extensão é ilustrado abaixo.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versões
A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.
Como citar
Pesquisadores deveriam citar esta obra da seguinte maneira:
Silliman K, Anderson S, Thompson L (2024). eDNA from Gulf of Mexico Ecosystems and Carbon Cruise 2021 (GOMECC-4). Version 1.7. United States Geological Survey. Occurrence dataset. https://ipt-obis.gbif.us/resource?r=noaa-aoml-gomecc4&v=1.7
Direitos
Pesquisadores devem respeitar a seguinte declaração de direitos:
O editor e o detentor dos direitos deste trabalho é United States Geological Survey. To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF Registration
Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 9012def0-bd87-48a0-ac9e-e0e78dd37689. United States Geological Survey publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por GBIF-US.
Palavras-chave
Occurrence; Observation; ATLANTIC OCEAN (UUID: cf249a36-2e82-4d32-84cd-23a4f40bb393); GULF OF MEXICO (UUID: 75fab119-51a6-4b59-9711-f6c3cd3139db); Atlantic Oceanographic and Meteorological Laboratory; OAR; NOAA; U.S. Department of Commerce (UUID: 274cc3ed-e075-4fb3-89cd-51fa72bc64f9)
Dados externos
Os dados de recurso também estão disponíveis em outros formatos
| Github Code Repo | https://github.com/aomlomics/gomecc Unknown R and Python code |
|---|---|
| NCBI BioProject | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA887898/ Unknown FASTQ |
Contatos
- Provedor Dos Metadados ●
- Autor ●
- Originador
https://orcid.org/0000-0001-5964-3965
- Autor ●
- Originador
- Autor ●
- Originador ●
- Ponto De Contato
Cobertura Geográfica
Gulf of Mexico and south Atlantic Ocean
| Coordenadas delimitadoras | Sul Oeste [18,836, -97,639], Norte Leste [30,111, -79,618] |
|---|
Cobertura Taxonômica
18S and 16S sequences assigned to Bacteria, Archaea, Chromista, Animalia, Plantae, Protozoa, and Fungi.
| Reino | Bacteria, Archaeae, Chromista, Animalia, Plantae, Protozoa, Fungi |
|---|
Cobertura Temporal
| Data Inicial / Data final | 2021-09-14 / 2021-10-20 |
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Dados Sobre o Projeto
The effort was in support of the coastal monitoring and research objectives of NOAA’S Ocean Acidification Program. The cruise was designed to obtain a snapshot of key carbon, physical, and biogeochemical parameters as they relate to ocean acidification (OA) in the coastal realm. This was the fourth occupation of the Gulf of Mexico as part of the Ocean Acidification Program’s monitoring efforts, with the first three occurring in 2007, 2012 and 2017.
| Título | Gulf of Mexico Ecosystems and Carbon Cycle |
|---|---|
| Identificador | GOMECC |
| Financiamento | NOAA/OAR Ocean Acidification Program Grant 21392, "Assessing ecosystem responses of Gulf of Mexico communities to OA using environmental DNA (or: Understanding biodiversity in the Gulf of Mexico using eDNA) http://dx.doi.org/10.13039/100018228 |
| Descrição da Área de Estudo | This report describes the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC4) cruise on board the R/V Ronald H. Brown departing from Key West, FL into the Gulf of Mexico and then around the coastal waters of the Gulf of Mexico in a counter-clockwise direction. The cruise took place from September 13–October 21, 2021 |
| Descrição do Design | The cruise included a series of 15 transects approximately orthogonal to the coast of the Gulf of Mexico and a 16th partial transect along the 27°N line, between Florida and the Bahamas, as well as a comprehensive set of underway measurements along the entire cruise track. In addition to these transects, three more stations were sampled as part of a collaboration with the National Parks Service to monitor ocean acidification at national parks. Four parks participated in this effort: Padre Island (in Texas), Dry Tortugas, Everglades, and Biscayne (these three in Florida). |
O pessoal envolvido no projeto:
Métodos de Amostragem
For more information see the cruise report: https://doi.org/10.25923/rwx5-s713
| Área de Estudo | For more information see the cruise report: https://doi.org/10.25923/rwx5-s713 |
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Descrição dos passos do método:
- Detailed methods will be published in forthcoming paper. This field will be updated after publication.
Citações bibliográficas
- Barbero, Leticia et al. "Cruise report: Fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) Cruise", 2021 https://doi.org/10.25923/rwx5-s713
Metadados Adicionais
| Propósito | Implement eDNA sampling to better understand the impact of ocean acidification on marine life (bacteria to fish), develop models to predict indicator species and their responses to future climate scenarios, and inform ecosystem management strategies. |
|---|---|
| Identificadores alternativos | 9012def0-bd87-48a0-ac9e-e0e78dd37689 |
| https://doi.org/10.15468/sm6fpz | |
| https://obis.org/dataset/210efc7c-4762-47ee-b4b5-22a0f436ef44 | |
| https://ipt-obis.gbif.us/resource?r=noaa-aoml-gomecc4 |