說明
Seawater was collected on board the NOAA ship Ronald H. Brown as part of the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) cruise from September 13 to October 21, 2021. Sampling for GOMECC-4 occurred along 16 coastal-offshore transects across the entire Gulf of Mexico and an additional line at 27N latitude in the Atlantic Ocean. We also collected eDNA samples near Padre Island National Seashore (U.S. National Parks Service), a barrier island located off the coast of south Texas. Vertical CTD sampling was employed at each site to measure discrete chemical, physical, and biological properties. Water sampling for DNA filtration was conducted at 54 out of 141 total sites and three depths per site (surface, deep chlorophyll maximum, and near bottom) to capture horizontal and vertical gradients of bacterial, protistan, and metazoan diversity across the Gulf.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 311,390 筆紀錄。
亦存在 1 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Silliman K, Anderson S, Thompson L (2024). eDNA from Gulf of Mexico Ecosystems and Carbon Cruise 2021 (GOMECC-4). Version 1.7. United States Geological Survey. Occurrence dataset. https://ipt-obis.gbif.us/resource?r=noaa-aoml-gomecc4&v=1.7
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 United States Geological Survey。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 9012def0-bd87-48a0-ac9e-e0e78dd37689。 United States Geological Survey 發佈此資源，並經由GBIF-US同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Observation; ATLANTIC OCEAN (UUID: cf249a36-2e82-4d32-84cd-23a4f40bb393); GULF OF MEXICO (UUID: 75fab119-51a6-4b59-9711-f6c3cd3139db); Atlantic Oceanographic and Meteorological Laboratory; OAR; NOAA; U.S. Department of Commerce (UUID: 274cc3ed-e075-4fb3-89cd-51fa72bc64f9)
外部資料
此資源尚有其他格式可用
| Github Code Repo | https://github.com/aomlomics/gomecc Unknown R and Python code |
|---|---|
| NCBI BioProject | https://www.ncbi.nlm.nih.gov/bioproject/PRJNA887898/ Unknown FASTQ |
聯絡資訊
- 元數據提供者 ●
- 作者 ●
- 出處
- Research Scientist
- 4301 Rickenbacker Cswy
https://orcid.org/0000-0001-5964-3965
- 作者 ●
- 出處
- Postdoctoral Research Associate
- 作者 ●
- 出處 ●
- 連絡人
- Associate Research Professor
- 4301 Rickenbacker Cswy
地理涵蓋範圍
Gulf of Mexico and south Atlantic Ocean
| 界定座標範圍 | 緯度南界 經度西界 [18.836, -97.639], 緯度北界 經度東界 [30.111, -79.618] |
|---|
分類群涵蓋範圍
18S and 16S sequences assigned to Bacteria, Archaea, Chromista, Animalia, Plantae, Protozoa, and Fungi.
| Kingdom | Bacteria, Archaeae, Chromista, Animalia, Plantae, Protozoa, Fungi |
|---|
時間涵蓋範圍
| 起始日期 / 結束日期 | 2021-09-14 / 2021-10-20 |
|---|
計畫資料
The effort was in support of the coastal monitoring and research objectives of NOAA’S Ocean Acidification Program. The cruise was designed to obtain a snapshot of key carbon, physical, and biogeochemical parameters as they relate to ocean acidification (OA) in the coastal realm. This was the fourth occupation of the Gulf of Mexico as part of the Ocean Acidification Program’s monitoring efforts, with the first three occurring in 2007, 2012 and 2017.
| 計畫名稱 | Gulf of Mexico Ecosystems and Carbon Cycle |
|---|---|
| 辨識碼 | GOMECC |
| 經費來源 | NOAA/OAR Ocean Acidification Program Grant 21392, "Assessing ecosystem responses of Gulf of Mexico communities to OA using environmental DNA (or: Understanding biodiversity in the Gulf of Mexico using eDNA) http://dx.doi.org/10.13039/100018228 |
| 研究區域描述 | This report describes the fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC4) cruise on board the R/V Ronald H. Brown departing from Key West, FL into the Gulf of Mexico and then around the coastal waters of the Gulf of Mexico in a counter-clockwise direction. The cruise took place from September 13–October 21, 2021 |
| 研究設計描述 | The cruise included a series of 15 transects approximately orthogonal to the coast of the Gulf of Mexico and a 16th partial transect along the 27°N line, between Florida and the Bahamas, as well as a comprehensive set of underway measurements along the entire cruise track. In addition to these transects, three more stations were sampled as part of a collaboration with the National Parks Service to monitor ocean acidification at national parks. Four parks participated in this effort: Padre Island (in Texas), Dry Tortugas, Everglades, and Biscayne (these three in Florida). |
參與計畫的人員:
取樣方法
For more information see the cruise report: https://doi.org/10.25923/rwx5-s713
| 研究範圍 | For more information see the cruise report: https://doi.org/10.25923/rwx5-s713 |
|---|
方法步驟描述:
- Detailed methods will be published in forthcoming paper. This field will be updated after publication.
引用文獻
- Barbero, Leticia et al. "Cruise report: Fourth Gulf of Mexico Ecosystems and Carbon Cycle (GOMECC-4) Cruise", 2021 https://doi.org/10.25923/rwx5-s713
額外的詮釋資料
| 目的 | Implement eDNA sampling to better understand the impact of ocean acidification on marine life (bacteria to fish), develop models to predict indicator species and their responses to future climate scenarios, and inform ecosystem management strategies. |
|---|---|
| 替代的識別碼 | 9012def0-bd87-48a0-ac9e-e0e78dd37689 |
| https://doi.org/10.15468/sm6fpz | |
| https://obis.org/dataset/210efc7c-4762-47ee-b4b5-22a0f436ef44 | |
| https://ipt-obis.gbif.us/resource?r=noaa-aoml-gomecc4 |